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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1886-RA through 18771 annotations produced 1 hits



ATP7 (ATP7):

Annotation Number : CG1886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030343
Gbrowse : chrX:11749028-11757725 (+) // 100.0 //
Probeset : 1634704_at
Accessions : protein= NP_572756;, nucleotide= NM_132528;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0030343.
Homophila reports that CG1886 is a close match (1e-12) to human gene ATP2B2;PMCA2 (NP_001674), a gene associated with Deafness, autosomal recessive 12, modifier of, 601386 (3).
BioGrid reports that CG1886 interacts with CG9784 .
TRiP has 1 RNAi stocks for FBgn0030343 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 04 of 4 0.50Down
Head44 54 of 4 0.70None
Eye44 34 of 4 0.73Down
Thoracicoabdominal ganglion30 34 of 4 0.50Down
Salivary gland11 30 of 4 0.19Down
Crop35 14 of 4 0.60Down
Midgut69 34 of 4 1.10None
Tubule117 124 of 4 1.90Up
Hindgut58 24 of 4 1.00None
Heart61 44 of 4 1.01None
Fat body38 104 of 4 0.63Down
Ovary58 24 of 4 1.00None
Testis249 44 of 4 4.10Up
Male accessory glands46 14 of 4 0.80None
Virgin spermatheca23 04 of 4 0.38Down
Mated spermatheca22 24 of 4 0.36Down
Adult carcass53 54 of 4 0.90None
Larval CNS22 24 of 4 0.37Down
Larval Salivary gland19 34 of 4 0.31Down
Larval midgut126 54 of 4 2.09Up
Larval tubule88 24 of 4 1.50Up
Larval hindgut53 14 of 4 0.88None
Larval fat body74 14 of 4 1.20None
Larval trachea27 54 of 4 0.45Down
Larval carcass29 24 of 4 0.48Down
S2 cells (growing)62 34 of 4 1.03None
Whole fly60 54 of 4

Looking for CG1886-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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