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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG18870-RA through 18771 annotations produced 1 hits


Annotation Number : CG18870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042180
Gbrowse : chr2R:17502267-17504372 (-) // 100.0 //
Probeset : 1627244_at
Accessions : protein= NP_652704;, nucleotide= NM_144447;
FlyMine data for FBgn0042180.
VDRC has 3 RNAi stocks for FBgn0042180 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 54 of 4 0.90None
Head73 64 of 4 0.40Down
Eye82 34 of 4 0.42Down
Thoracicoabdominal ganglion173 24 of 4 0.90None
Salivary gland46 53 of 4 0.24Down
Crop53 84 of 4 0.30Down
Midgut37 13 of 4 0.20Down
Tubule66 14 of 4 0.30Down
Hindgut51 24 of 4 0.30Down
Heart48 24 of 4 0.24Down
Fat body30 34 of 4 0.16Down
Ovary524 54 of 4 2.60Up
Testis39 14 of 4 0.20Down
Male accessory glands28 34 of 4 0.10Down
Virgin spermatheca41 14 of 4 0.21Down
Mated spermatheca47 24 of 4 0.24Down
Adult carcass42 64 of 4 0.20Down
Larval CNS117 34 of 4 0.59Down
Larval Salivary gland42 34 of 4 0.21Down
Larval midgut43 13 of 4 0.22Down
Larval tubule87 24 of 4 0.40Down
Larval hindgut72 24 of 4 0.37Down
Larval fat body33 34 of 4 0.20Down
Larval trachea135 114 of 4 0.68Down
Larval carcass63 54 of 4 0.32Down
S2 cells (growing)145 44 of 4 0.73Down
Whole fly198 104 of 4

Looking for CG18870-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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