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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1891-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:3693982-3697575 (+) // 100.0 //):

Annotation Number : CG1891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-57
Gbrowse :
Probeset : 1633805_a_at
Accessions : protein= EC:2.7.11.-, nucleotide=
Interpro : "0001745 // compound eye morphogenesis // non-traceable author statement /// 0006468 // protein phosphorylation // infer
FlyMine data for chr2-57.
Homophila reports that CG1891 is a close match (6e-11) to human gene SRC;ASV;SRC1 (NP_938033), a gene associated with Colon cancer, advanced (3).
BioGrid reports that CG1891 interacts with CG9885 CG9885 CG9885 CG5460 CG12399 CG12399 CG12399 CG1775 CG5490 CG9885 CG5562 CG5562 CG15319 CG31695 CG31695 CG7996 CG8428 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 CG31045 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain277 ± 74 of 4 1.00None
Head206 ± 84 of 4 0.70Down
Eye209 ± 84 of 4 0.75Down
Thoracicoabdominal ganglion237 ± 84 of 4 0.90Down
Salivary gland331 ± 114 of 4 1.19Up
Crop260 ± 124 of 4 0.90None
Midgut232 ± 124 of 4 0.80Down
Tubule185 ± 24 of 4 0.70Down
Hindgut222 ± 34 of 4 0.80Down
Heart162 ± 64 of 4 0.58Down
Fat body202 ± 234 of 4 0.73Down
Ovary562 ± 124 of 4 2.00Up
Testis193 ± 64 of 4 0.70Down
Male accessory glands288 ± 124 of 4 1.00None
Virgin spermatheca191 ± 64 of 4 0.69Down
Mated spermatheca197 ± 104 of 4 0.71Down
Adult carcass204 ± 64 of 4 0.70Down
Larval CNS318 ± 64 of 4 1.15Up
Larval Salivary gland179 ± 74 of 4 0.65Down
Larval midgut160 ± 54 of 4 0.58Down
Larval tubule209 ± 74 of 4 0.80Down
Larval hindgut189 ± 14 of 4 0.68Down
Larval fat body116 ± 74 of 4 0.40Down
Larval trachea160 ± 124 of 4 0.58Down
Larval carcass172 ± 54 of 4 0.62Down
S2 cells (growing)387 ± 54 of 4 1.39Up
Whole fly278 ± 84 of 4

Looking for CG1891-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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