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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1893-RA through 18771 annotations produced 1 hits

CG1893 (scramb2):

Annotation Number : CG1893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035390
Gbrowse : chr3L:3044104-3046810 (-) // 100.0 //
Probeset : 1632985_at
Accessions : protein= NP_647761;, nucleotide= NM_139504;
Interpro : 0017128 // phospholipid scramblase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0035390.
BDGP gene expression has embryonic in situ data for CG1893: 9 pix of staining in 15 body parts.
BioGrid reports that CG1893 interacts with CG4634 CG6357 Dmel CG14425 .
VDRC has 2 RNAi stocks for FBgn0035390 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 54 of 4 0.90None
Head251 174 of 4 1.30Up
Eye322 304 of 4 1.68Up
Thoracicoabdominal ganglion200 54 of 4 1.00None
Salivary gland198 174 of 4 1.03None
Crop402 114 of 4 2.10Up
Midgut108 24 of 4 0.60Down
Tubule110 14 of 4 0.60Down
Hindgut188 44 of 4 1.00None
Heart277 134 of 4 1.44Up
Fat body191 154 of 4 1.00None
Ovary326 74 of 4 1.70Up
Testis81 14 of 4 0.40Down
Male accessory glands148 74 of 4 0.80Down
Virgin spermatheca262 124 of 4 1.36Up
Mated spermatheca240 84 of 4 1.25Up
Adult carcass228 174 of 4 1.20None
Larval CNS257 154 of 4 1.34Up
Larval Salivary gland199 14 of 4 1.04None
Larval midgut132 84 of 4 0.69Down
Larval tubule127 124 of 4 0.70Down
Larval hindgut433 134 of 4 2.26Up
Larval fat body162 154 of 4 0.80None
Larval trachea606 784 of 4 3.15Up
Larval carcass489 94 of 4 2.55Up
S2 cells (growing)453 34 of 4 2.36Up
Whole fly192 74 of 4

Looking for CG1893-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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