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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1895-RA through 18771 annotations produced 1 hits


Cyp28c1 (Cyp28c1):

Annotation Number : CG1895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030339
Gbrowse : chrX:11733642-11735391 (+) // 100.0 //
Probeset : 1629610_at
Accessions : protein= NP_572752;, nucleotide= NM_132524;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0030339.
Homophila reports that CG1895 is a close match (5e-11) to human gene CYP2R1 (NP_078790), a gene associated with Rickets due to defect in vitamin D 25-hydroxylation, 600081 (3).
VDRC has 1 RNAi stocks for FBgn0030339 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 3.50Up
Head45 ± 24 of 4 3.20Up
Eye4 ± 21 of 4 0.34Down
Thoracicoabdominal ganglion47 ± 34 of 4 3.30Up
Salivary gland6 ± 40 of 4 0.45None
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.10Down
Fat body1 ± 00 of 4 0.07Down
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 10 of 4 0.10Down
Male accessory glands1161 ± 414 of 482.40Up
Virgin spermatheca1 ± 00 of 4 0.09Down
Mated spermatheca0 ± 00 of 4 0.05Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS15 ± 43 of 4 1.08None
Larval Salivary gland30 ± 41 of 4 2.19Up
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.05Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea3 ± 30 of 4 0.21Down
Larval carcass1 ± 00 of 4 0.10Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly14 ± 13 of 4

Looking for CG1895-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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