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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1901-RA through 18771 annotations produced 1 hits



maverick (mav):

Annotation Number : CG1901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039914
Gbrowse : chr4:643841-646656 (-) // 100.0 //
Probeset : 1633723_at
Accessions : protein= NP_001014690; /// NP_001137856; /// NP_524626;, nucleotide= NM_001014690; /// NM_001144384; /// NM_079887;
Interpro : 0005160 // transforming growth factor beta receptor binding // inferred from sequence or structural similarity /// 00051
FlyMine data for FBgn0039914.
Homophila reports that CG1901 is a close match (6e-12) to human gene BMP2B;BMP2B1;BMP4;MCOPS6 (NP_570912), a gene associated with Microphthalmia, syndromic 6, 607932 (3).
BioGrid reports that CG1901 interacts with CG5169 CG5846 .
TRiP has 2 RNAi stocks for FBgn0039914 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 24 of 4 0.80Down
Head146 94 of 4 0.90None
Eye184 114 of 4 1.11None
Thoracicoabdominal ganglion116 54 of 4 0.70Down
Salivary gland22 42 of 4 0.14Down
Crop523 94 of 4 3.20Up
Midgut42 14 of 4 0.30Down
Tubule17 23 of 4 0.10Down
Hindgut273 24 of 4 1.60Up
Heart131 64 of 4 0.79Down
Fat body29 54 of 4 0.18Down
Ovary359 64 of 4 2.20Up
Testis34 14 of 4 0.20Down
Male accessory glands3612 1224 of 421.80Up
Virgin spermatheca32 14 of 4 0.19Down
Mated spermatheca31 24 of 4 0.19Down
Adult carcass103 34 of 4 0.60Down
Larval CNS96 74 of 4 0.58Down
Larval Salivary gland22 04 of 4 0.13Down
Larval midgut41 14 of 4 0.25Down
Larval tubule19 14 of 4 0.10Down
Larval hindgut246 154 of 4 1.49Up
Larval fat body83 54 of 4 0.50Down
Larval trachea621 184 of 4 3.74Up
Larval carcass410 34 of 4 2.48Up
S2 cells (growing)63 44 of 4 0.38Down
Whole fly166 24 of 4

Looking for CG1901-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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