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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1902-RA through 18771 annotations produced 1 hits


Annotation Number : CG1902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033434
Gbrowse : chr2R:5481587-5493139 (+) // 100.0 //
Probeset : 1628929_s_at
Accessions : protein= NP_610507; /// NP_724815;, nucleotide= NM_136663; /// NM_165689;
FlyMine data for FBgn0033434.
BDGP gene expression has embryonic in situ data for CG1902: 5 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033434 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain645 104 of 4 1.80Up
Head355 204 of 4 1.00None
Eye306 94 of 4 0.84None
Thoracicoabdominal ganglion558 144 of 4 1.50Up
Salivary gland337 114 of 4 0.92None
Crop810 114 of 4 2.20Up
Midgut1598 254 of 4 4.40Up
Tubule209 134 of 4 0.60Down
Hindgut733 114 of 4 2.00Up
Heart456 94 of 4 1.25Up
Fat body396 214 of 4 1.09None
Ovary298 94 of 4 0.80None
Testis747 74 of 4 2.00Up
Male accessory glands1244 584 of 4 3.40Up
Virgin spermatheca221 424 of 4 0.61Down
Mated spermatheca247 444 of 4 0.68None
Adult carcass302 214 of 4 0.80None
Larval CNS526 54 of 4 1.44Up
Larval Salivary gland350 34 of 4 0.96None
Larval midgut1087 404 of 4 2.98Up
Larval tubule521 294 of 4 1.40Up
Larval hindgut633 224 of 4 1.73Up
Larval fat body438 404 of 4 1.20None
Larval trachea585 654 of 4 1.60Up
Larval carcass495 174 of 4 1.36Up
S2 cells (growing)436 144 of 4 1.20None
Whole fly365 244 of 4

Looking for CG1902-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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