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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1907-RA through 18771 annotations produced 1 hits



(CG1907):

Annotation Number : CG1907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039674
Gbrowse : chr3R:25444755-25446480 (+) // 100.0 //
Probeset : 1630575_at
Accessions : protein= NP_651703;, nucleotide= NM_143446;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0039674.
BDGP gene expression has embryonic in situ data for CG1907: 4 pix of staining in 1 body parts.
Homophila reports that CG1907 is a close match (7e-12) to human gene DNC;MCPHA;MUP1;SLC25A19 (NP_068380), a gene associated with Microcephaly, Amish type, 607196 (3).
TRiP has 1 RNAi stocks for FBgn0039674 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039674 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain348 134 of 4 1.20Up
Head587 144 of 4 2.00Up
Eye330 284 of 4 1.15None
Thoracicoabdominal ganglion470 254 of 4 1.60Up
Salivary gland707 154 of 4 2.46Up
Crop607 184 of 4 2.10Up
Midgut460 154 of 4 1.60Up
Tubule662 374 of 4 2.30Up
Hindgut987 194 of 4 3.40Up
Heart821 84 of 4 2.85Up
Fat body1194 674 of 4 4.15Up
Ovary249 64 of 4 0.90None
Testis66 24 of 4 0.20Down
Male accessory glands283 74 of 4 1.00None
Virgin spermatheca1493 524 of 4 5.18Up
Mated spermatheca1051 934 of 4 3.65Up
Adult carcass773 344 of 4 2.70Up
Larval CNS78 54 of 4 0.27Down
Larval Salivary gland363 184 of 4 1.26Up
Larval midgut567 144 of 4 1.97Up
Larval tubule318 284 of 4 1.10None
Larval hindgut1093 264 of 4 3.79Up
Larval fat body299 874 of 4 1.00None
Larval trachea202 34 of 4 0.70Down
Larval carcass920 974 of 4 3.20Up
S2 cells (growing)263 44 of 4 0.92None
Whole fly288 184 of 4

Looking for CG1907-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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