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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1909-RA through 18771 annotations produced 1 hits



(CG1909):

Annotation Number : CG1909
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039911
Gbrowse : chr4:603736-609976 (+) // 100.0 //
Probeset : 1632023_s_at
Accessions : protein= NP_651928; /// NP_726586;, nucleotide= NM_143671; /// NM_166773;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 003005
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0039911.
Homophila reports that CG1909 is a close match (4e-26) to human gene RAPSN;CMS1D;CMS1E (NP_116034), a gene associated with Fetal akinesia deformation sequence, 208150 (3);Myasthenic syndrome, congenital, associated with acetylcholine receptor deficiency, 608931 (3);Myasthenic syndrome, congenital, associated with facial dysmorphism and acetylcholine receptor deficiency, 608931 (3).
BioGrid reports that CG1909 interacts with CG6608 .
TRiP has 1 RNAi stocks for FBgn0039911 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039911 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1265 ± 234 of 430.10Up
Head306 ± 144 of 4 7.30Up
Eye101 ± 84 of 4 2.42Up
Thoracicoabdominal ganglion1046 ± 204 of 424.90Up
Salivary gland13 ± 30 of 4 0.32Down
Crop6 ± 12 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut24 ± 14 of 4 0.60Down
Heart4 ± 01 of 4 0.10Down
Fat body5 ± 41 of 4 0.14Down
Ovary6 ± 02 of 4 0.20Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands9 ± 10 of 4 0.20Down
Virgin spermatheca6 ± 10 of 4 0.15Down
Mated spermatheca5 ± 10 of 4 0.12Down
Adult carcass20 ± 23 of 4 0.50Down
Larval CNS247 ± 434 of 4 5.89Up
Larval Salivary gland9 ± 12 of 4 0.23Down
Larval midgut3 ± 10 of 4 0.08Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut4 ± 01 of 4 0.11Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea6 ± 03 of 4 0.14Down
Larval carcass6 ± 10 of 4 0.14Down
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly42 ± 14 of 4

Looking for CG1909-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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