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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1910-RB through 18771 annotations produced 1 hits



anon-fast-evolving-1A3 (CG1910):

Annotation Number : CG1910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022349
Gbrowse : chr3R:27571765-27576734 (+) // 99.81 //
Probeset : 1633576_s_at
Accessions : protein= NP_651888; /// NP_733451; /// NP_733452; /// NP_733453;, nucleotide= NM_143631; /// NM_170572; /// NM_170573; /// NM_170574;
FlyMine data for FBgn0022349.
BDGP gene expression has embryonic in situ data for CG1910: 26 pix of staining in 15 body parts.
BioGrid reports that CG1910 interacts with CG7987 .
VDRC has 2 RNAi stocks for FBgn0022349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 ± 44 of 4 0.70Down
Head138 ± 114 of 4 0.60Down
Eye221 ± 134 of 4 1.00None
Thoracicoabdominal ganglion103 ± 34 of 4 0.50Down
Salivary gland291 ± 224 of 4 1.31None
Crop233 ± 74 of 4 1.10None
Midgut181 ± 74 of 4 0.80None
Tubule155 ± 94 of 4 0.70Down
Hindgut192 ± 94 of 4 0.90None
Heart208 ± 164 of 4 0.94None
Fat body154 ± 164 of 4 0.70Down
Ovary554 ± 144 of 4 2.50Up
Testis59 ± 14 of 4 0.30Down
Male accessory glands295 ± 134 of 4 1.30Up
Virgin spermatheca305 ± 84 of 4 1.37Up
Mated spermatheca390 ± 284 of 4 1.76Up
Adult carcass133 ± 124 of 4 0.60Down
Larval CNS435 ± 234 of 4 1.96Up
Larval Salivary gland390 ± 214 of 4 1.76Up
Larval midgut118 ± 54 of 4 0.53Down
Larval tubule236 ± 84 of 4 1.10None
Larval hindgut162 ± 84 of 4 0.73Down
Larval fat body218 ± 154 of 4 1.00None
Larval trachea369 ± 124 of 4 1.66Up
Larval carcass158 ± 44 of 4 0.71Down
S2 cells (growing)707 ± 294 of 4 3.19Up
Whole fly222 ± 174 of 4

Looking for CG1910-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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