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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1944-RA through 18771 annotations produced 1 hits



Cyp4p2 (Cyp4p2):

Annotation Number : CG1944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033395
Gbrowse : chr2R:5125034-5127338 (+) // 100.0 //
Probeset : 1640566_at
Accessions : protein= NP_610472;, nucleotide= NM_136628;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033395.
Homophila reports that CG1944 is a close match (3e-11) to human gene CYP11A;P450SCC (NP_001093243), a gene associated with Adrenal insufficiency, congenital with or without 46, XY sex reversal (3);Lipoid congenital adrenal hyperplasia, 201710 (3).
BioGrid reports that CG1944 interacts with CG6205 .
VDRC has 1 RNAi stocks for FBgn0033395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.30None
Head10 11 of 4 1.10None
Eye1 00 of 4 0.11Down
Thoracicoabdominal ganglion2 00 of 4 0.20Down
Salivary gland8 10 of 4 0.84None
Crop4 00 of 4 0.40None
Midgut63 84 of 4 6.50Up
Tubule13 10 of 4 1.30Up
Hindgut26 54 of 4 2.70Up
Heart2 00 of 4 0.22Down
Fat body7 20 of 4 0.78None
Ovary1 00 of 4 0.20Down
Testis1 00 of 4 0.10Down
Male accessory glands17 40 of 4 1.80None
Virgin spermatheca5 10 of 4 0.56None
Mated spermatheca7 20 of 4 0.70None
Adult carcass4 10 of 4 0.40None
Larval CNS4 20 of 4 0.41Down
Larval Salivary gland3 10 of 4 0.30Down
Larval midgut2 00 of 4 0.21Down
Larval tubule10 00 of 4 1.10None
Larval hindgut4 10 of 4 0.40None
Larval fat body5 30 of 4 0.60None
Larval trachea3 30 of 4 0.33Down
Larval carcass6 10 of 4 0.63None
S2 cells (growing)6 00 of 4 0.68None
Whole fly9 11 of 4

Looking for CG1944-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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