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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1945-RC through 18771 annotations produced 2 hits



fat facets (faf):

Annotation Number : CG1945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005632
Gbrowse : chr3R:27602755-27614032 (+) // 100.0 //
Probeset : 1639083_at
Accessions : protein= NP_524612; /// NP_733455;, nucleotide= NM_079873; /// NM_170576;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific pro
FlyMine data for FBgn0005632.
BDGP gene expression has embryonic in situ data for faf: 9 pix of staining in 5 body parts.
Homophila reports that CG1945 is a close match (0) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
BioGrid reports that CG1945 interacts with CG3166 CG9012 CG2275 CG4097 CG4097 CG17077 CG9375 CG9375 CG18102 CG1956 CG17870 CG5553 CG7425 CG7425 CG7425 CG32592 CG8532 CG8532 CG8532 CG8532 .
TRiP has 1 RNAi stocks for FBgn0005632 available for purchase.
VDRC has 5 RNAi stocks for FBgn0005632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 12 of 4 0.60Down
Head22 04 of 4 1.10None
Eye35 34 of 4 1.81Up
Thoracicoabdominal ganglion8 10 of 4 0.40Down
Salivary gland66 82 of 4 3.44Up
Crop29 13 of 4 1.50Up
Midgut29 43 of 4 1.50None
Tubule75 54 of 4 3.90Up
Hindgut30 24 of 4 1.50Up
Heart28 34 of 4 1.46None
Fat body40 74 of 4 2.10Up
Ovary32 14 of 4 1.70Up
Testis6 01 of 4 0.30Down
Male accessory glands16 40 of 4 0.80None
Virgin spermatheca44 44 of 4 2.28Up
Mated spermatheca42 14 of 4 2.18Up
Adult carcass20 63 of 4 1.10None
Larval CNS26 74 of 4 1.36None
Larval Salivary gland58 94 of 4 3.02Up
Larval midgut42 14 of 4 2.19Up
Larval tubule38 44 of 4 2.00Up
Larval hindgut51 14 of 4 2.64Up
Larval fat body41 34 of 4 2.10Up
Larval trachea36 64 of 4 1.86Up
Larval carcass38 44 of 4 2.00Up
S2 cells (growing)54 34 of 4 2.79Up
Whole fly19 24 of 4



fat facets (faf):

Annotation Number : CG1945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005632
Gbrowse : chr3R:27602755-27614032 (+) // 100.0 //
Probeset : 1634086_a_at
Accessions : protein= NP_524612; /// NP_733455;, nucleotide= NM_079873; /// NM_170576;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific pro
FlyMine data for FBgn0005632.
BDGP gene expression has embryonic in situ data for faf: 9 pix of staining in 5 body parts.
Homophila reports that CG1945 is a close match (0) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
BioGrid reports that CG1945 interacts with CG3166 CG9012 CG2275 CG4097 CG4097 CG17077 CG9375 CG9375 CG18102 CG1956 CG17870 CG5553 CG7425 CG7425 CG7425 CG32592 CG8532 CG8532 CG8532 CG8532 .
TRiP has 1 RNAi stocks for FBgn0005632 available for purchase.
VDRC has 5 RNAi stocks for FBgn0005632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 14 of 4 1.20None
Head57 84 of 4 0.90None
Eye119 84 of 4 1.78Up
Thoracicoabdominal ganglion48 64 of 4 0.70None
Salivary gland113 64 of 4 1.69Up
Crop82 64 of 4 1.20None
Midgut77 34 of 4 1.20None
Tubule79 24 of 4 1.20Up
Hindgut72 24 of 4 1.10None
Heart92 64 of 4 1.37Up
Fat body46 74 of 4 0.69Down
Ovary125 34 of 4 1.90Up
Testis18 14 of 4 0.30Down
Male accessory glands43 44 of 4 0.60Down
Virgin spermatheca19 34 of 4 0.28Down
Mated spermatheca23 14 of 4 0.35Down
Adult carcass48 34 of 4 0.70Down
Larval CNS55 64 of 4 0.82None
Larval Salivary gland57 24 of 4 0.85None
Larval midgut62 74 of 4 0.93None
Larval tubule89 24 of 4 1.30Up
Larval hindgut66 44 of 4 0.99None
Larval fat body65 74 of 4 1.00None
Larval trachea81 24 of 4 1.20Up
Larval carcass56 24 of 4 0.84None
S2 cells (growing)154 74 of 4 2.30Up
Whole fly67 44 of 4

Looking for CG1945-RC. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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