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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1946-RA through 18771 annotations produced 1 hits



(CG1946):

Annotation Number : CG1946
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033216
Gbrowse : chr2R:3603383-3604207 (+) // 100.0 //
Probeset : 1625129_at
Accessions : protein= NP_610319;, nucleotide= NM_136475;
Interpro : "0016747 // transferase activity
FlyMine data for FBgn0033216.
VDRC has 5 RNAi stocks for FBgn0033216 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 02 of 4 0.20Down
Head3 ± 11 of 4 0.20Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion6 ± 00 of 4 0.30Down
Salivary gland13 ± 30 of 4 0.58None
Crop7 ± 00 of 4 0.30Down
Midgut518 ± 134 of 422.40Up
Tubule6 ± 10 of 4 0.30Down
Hindgut21 ± 24 of 4 0.90None
Heart5 ± 11 of 4 0.23Down
Fat body9 ± 21 of 4 0.40Down
Ovary2 ± 00 of 4 0.10Down
Testis5 ± 12 of 4 0.20Down
Male accessory glands11 ± 23 of 4 0.50None
Virgin spermatheca6 ± 11 of 4 0.28Down
Mated spermatheca9 ± 12 of 4 0.40Down
Adult carcass7 ± 30 of 4 0.30Down
Larval CNS3 ± 11 of 4 0.16Down
Larval Salivary gland3 ± 10 of 4 0.15Down
Larval midgut7 ± 11 of 4 0.34Down
Larval tubule7 ± 22 of 4 0.30Down
Larval hindgut4 ± 00 of 4 0.20Down
Larval fat body8 ± 22 of 4 0.40Down
Larval trachea4 ± 20 of 4 0.19Down
Larval carcass5 ± 00 of 4 0.24Down
S2 cells (growing)3 ± 00 of 4 0.14Down
Whole fly23 ± 44 of 4

Looking for CG1946-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime