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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1951-RA through 18771 annotations produced 1 hits



(CG1951):

Annotation Number : CG1951
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039623
Gbrowse : chr3R:24852947-24856661 (+) // 100.0 //
Probeset : 1639963_at
Accessions : protein= NP_651655;, nucleotide= NM_143398;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004672 // protein kinase activity // non-
FlyMine data for FBgn0039623.
TRiP has 1 RNAi stocks for FBgn0039623 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039623 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 ± 64 of 4 1.30None
Head75 ± 34 of 4 0.70None
Eye61 ± 34 of 4 0.54Down
Thoracicoabdominal ganglion130 ± 34 of 4 1.10None
Salivary gland72 ± 54 of 4 0.64Down
Crop85 ± 24 of 4 0.70None
Midgut86 ± 74 of 4 0.80None
Tubule76 ± 04 of 4 0.70Down
Hindgut71 ± 24 of 4 0.60Down
Heart46 ± 64 of 4 0.41Down
Fat body59 ± 44 of 4 0.52Down
Ovary298 ± 124 of 4 2.60Up
Testis103 ± 44 of 4 0.90None
Male accessory glands96 ± 84 of 4 0.80None
Virgin spermatheca98 ± 34 of 4 0.86None
Mated spermatheca109 ± 34 of 4 0.95None
Adult carcass57 ± 24 of 4 0.50Down
Larval CNS113 ± 54 of 4 0.99None
Larval Salivary gland122 ± 44 of 4 1.08None
Larval midgut100 ± 34 of 4 0.88None
Larval tubule152 ± 64 of 4 1.30None
Larval hindgut103 ± 54 of 4 0.91None
Larval fat body97 ± 64 of 4 0.90None
Larval trachea73 ± 14 of 4 0.64Down
Larval carcass76 ± 34 of 4 0.67None
S2 cells (growing)198 ± 44 of 4 1.74Up
Whole fly114 ± 124 of 4

Looking for CG1951-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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