Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1956-RA through 18771 annotations produced 1 hits



Enhancer of faf (R):

Annotation Number : CG1956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004636
Gbrowse : chr3L:1859113-1862234 (-) // 100.0 //
Probeset : 1632691_at
Accessions : protein= NP_476857;, nucleotide= NM_057509;
Pathway : cell extension // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from mutant phenotype /// 000
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
FlyMine data for FBgn0004636.
Homophila reports that CG1956 is a close match (1e-12) to human gene RAC2 (NP_002863), a gene associated with Neutrophil immunodeficiency syndrome, 608203 (3).
BioGrid reports that CG1956 interacts with CG3126 CG33529 CG1772 CG1945 CG1945 .
TRiP has 2 RNAi stocks for FBgn0004636 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain888 204 of 4 1.90Up
Head626 554 of 4 1.30None
Eye415 194 of 4 0.89None
Thoracicoabdominal ganglion734 244 of 4 1.60Up
Salivary gland631 174 of 4 1.36Up
Crop1265 554 of 4 2.70Up
Midgut761 134 of 4 1.60Up
Tubule795 194 of 4 1.70Up
Hindgut736 104 of 4 1.60Up
Heart879 414 of 4 1.89Up
Fat body839 674 of 4 1.80Up
Ovary498 174 of 4 1.10None
Testis153 64 of 4 0.30Down
Male accessory glands771 314 of 4 1.70Up
Virgin spermatheca1501 294 of 4 3.22Up
Mated spermatheca1449 254 of 4 3.11Up
Adult carcass634 434 of 4 1.40Up
Larval CNS1354 594 of 4 2.91Up
Larval Salivary gland839 204 of 4 1.80Up
Larval midgut791 374 of 4 1.70Up
Larval tubule1151 344 of 4 2.50Up
Larval hindgut937 124 of 4 2.01Up
Larval fat body1375 924 of 4 3.00Up
Larval trachea1137 754 of 4 2.44Up
Larval carcass624 194 of 4 1.34Up
S2 cells (growing)1384 54 of 4 2.97Up
Whole fly465 274 of 4

Looking for CG1956-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime