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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1957-RA through 18771 annotations produced 1 hits



CG1957 (Cpsf100):

Annotation Number : CG1957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027873
Gbrowse : chr3R:24860324-24862786 (+) // 100.0 //
Probeset : 1622930_a_at
Accessions : protein= NP_651658; /// NP_733264;, nucleotide= NM_143401; /// NM_170385;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005847 // mRNA cleavage and polyadenylation specificity f
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003730 // mRNA 3'-UTR binding // non-traceable author
FlyMine data for FBgn0027873.
BDGP gene expression has embryonic in situ data for BcDNA:LD14168: 11 pix of staining in 21 body parts.
TRiP has 1 RNAi stocks for FBgn0027873 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 34 of 4 0.60Down
Head39 ± 24 of 4 0.50Down
Eye41 ± 14 of 4 0.52Down
Thoracicoabdominal ganglion46 ± 24 of 4 0.60Down
Salivary gland46 ± 33 of 4 0.58Down
Crop49 ± 14 of 4 0.60Down
Midgut60 ± 34 of 4 0.80Down
Tubule98 ± 24 of 4 1.20Up
Hindgut45 ± 14 of 4 0.60Down
Heart38 ± 34 of 4 0.49Down
Fat body48 ± 34 of 4 0.60Down
Ovary143 ± 44 of 4 1.80Up
Testis41 ± 24 of 4 0.50Down
Male accessory glands70 ± 24 of 4 0.90Down
Virgin spermatheca87 ± 54 of 4 1.09None
Mated spermatheca81 ± 34 of 4 1.01None
Adult carcass41 ± 34 of 4 0.50Down
Larval CNS138 ± 84 of 4 1.73Up
Larval Salivary gland84 ± 54 of 4 1.05None
Larval midgut47 ± 44 of 4 0.59Down
Larval tubule125 ± 34 of 4 1.60Up
Larval hindgut71 ± 24 of 4 0.89None
Larval fat body51 ± 14 of 4 0.60Down
Larval trachea80 ± 44 of 4 1.00None
Larval carcass52 ± 14 of 4 0.66Down
S2 cells (growing)136 ± 34 of 4 1.70Up
Whole fly80 ± 24 of 4

Looking for CG1957-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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