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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1980-RA through 18771 annotations produced 1 hits



don juan (dj):

Annotation Number : CG1980
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019828
Gbrowse : chr3R:2885036-2886238 (+) // 100.0 //
Probeset : 1627959_a_at
Accessions : protein= NP_477220; /// NP_731118;, nucleotide= NM_057872; /// NM_169163;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // non-traceable author statement
FlyMine data for FBgn0019828.
VDRC has 3 RNAi stocks for FBgn0019828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 02 of 4 0.10Down
Head1 10 of 4 0.00Down
Eye3 10 of 4 0.09Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland15 23 of 4 0.38Down
Crop6 23 of 4 0.20Down
Midgut1 00 of 4 0.00Down
Tubule8 12 of 4 0.20Down
Hindgut5 01 of 4 0.10Down
Heart2 10 of 4 0.06Down
Fat body20 104 of 4 0.48Down
Ovary0 00 of 4 0.00Down
Testis405 204 of 4 9.70Up
Male accessory glands9 00 of 4 0.20Down
Virgin spermatheca14 04 of 4 0.35Down
Mated spermatheca21 34 of 4 0.52Down
Adult carcass7 30 of 4 0.20Down
Larval CNS5 24 of 4 0.14Down
Larval Salivary gland4 12 of 4 0.11Down
Larval midgut2 11 of 4 0.06Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 11 of 4 0.07Down
Larval fat body72 274 of 4 1.70None
Larval trachea5 41 of 4 0.14Down
Larval carcass1 00 of 4 0.04Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly41 64 of 4

Looking for CG1980-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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