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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1983-RA through 18771 annotations produced 1 hits



(CG1983):

Annotation Number : CG1983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039751
Gbrowse : chr3R:26002238-26003394 (-) // 100.0 //
Probeset : 1638630_at
Accessions : protein= NP_651776;, nucleotide= NM_143519;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039751.
BioGrid reports that CG1983 interacts with CG2893 .
VDRC has 2 RNAi stocks for FBgn0039751 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 ± 44 of 4 2.60Up
Head74 ± 94 of 4 1.30None
Eye84 ± 84 of 4 1.46Up
Thoracicoabdominal ganglion123 ± 54 of 4 2.10Up
Salivary gland97 ± 14 of 4 1.68Up
Crop79 ± 34 of 4 1.40Up
Midgut119 ± 44 of 4 2.00Up
Tubule123 ± 114 of 4 2.10Up
Hindgut70 ± 24 of 4 1.20None
Heart70 ± 54 of 4 1.21None
Fat body67 ± 64 of 4 1.16None
Ovary73 ± 14 of 4 1.30None
Testis17 ± 04 of 4 0.30Down
Male accessory glands66 ± 44 of 4 1.10None
Virgin spermatheca72 ± 34 of 4 1.24None
Mated spermatheca67 ± 44 of 4 1.15None
Adult carcass87 ± 24 of 4 1.50Up
Larval CNS42 ± 24 of 4 0.73None
Larval Salivary gland85 ± 114 of 4 1.47None
Larval midgut52 ± 44 of 4 0.90None
Larval tubule149 ± 24 of 4 2.60Up
Larval hindgut44 ± 54 of 4 0.76None
Larval fat body83 ± 104 of 4 1.40None
Larval trachea57 ± 114 of 4 0.98None
Larval carcass54 ± 74 of 4 0.93None
S2 cells (growing)71 ± 24 of 4 1.22None
Whole fly58 ± 54 of 4

Looking for CG1983-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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