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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1986-RA through 18771 annotations produced 1 hits



(CG1986):

Annotation Number : CG1986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030162
Gbrowse : chrX:9803424-9805159 (-) // 100.0 //
Probeset : 1639420_at
Accessions : protein= NP_572590;, nucleotide= NM_132362;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004465 // lipoprotein lipase activity // infer
FlyMine data for FBgn0030162.
BDGP gene expression has embryonic in situ data for CG1986: 10 pix of staining in 4 body parts.
Homophila reports that CG1986 is a close match (5e-19) to human gene LIPH (NP_640341), a gene associated with Hypotrichosis, total, Mari type, 604379 (3).
BioGrid reports that CG1986 interacts with CG2210 CG8332 CG8893 CG31450 CG33525 .
VDRC has 3 RNAi stocks for FBgn0030162 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.80None
Head1 ± 00 of 4 0.70None
Eye0 ± 00 of 4 0.41None
Thoracicoabdominal ganglion1 ± 00 of 4 0.70None
Salivary gland2 ± 00 of 4 1.59None
Crop2 ± 00 of 4 1.60None
Midgut1 ± 00 of 4 0.90None
Tubule0 ± 00 of 4 0.60Down
Hindgut1 ± 00 of 4 0.80None
Heart1 ± 00 of 4 0.83None
Fat body0 ± 00 of 4 0.59None
Ovary0 ± 00 of 4 0.50None
Testis3 ± 00 of 4 2.30None
Male accessory glands5 ± 30 of 4 3.60None
Virgin spermatheca1 ± 00 of 4 0.81None
Mated spermatheca1 ± 00 of 4 0.93None
Adult carcass1 ± 00 of 4 1.00None
Larval CNS0 ± 00 of 4 0.59None
Larval Salivary gland1 ± 00 of 4 0.90None
Larval midgut0 ± 00 of 4 0.48None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.69None
Larval fat body4 ± 30 of 4 2.70None
Larval trachea1 ± 20 of 4 1.24None
Larval carcass1 ± 00 of 4 0.95None
S2 cells (growing)1 ± 00 of 4 0.72None
Whole fly1 ± 00 of 4

Looking for CG1986-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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