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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1989-RA through 18771 annotations produced 1 hits



Yippee (Yippee):

Annotation Number : CG1989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026749
Gbrowse : chrX:13279935-13281427 (-) // 100.0 //
Probeset : 1637611_at
Accessions : protein= NP_001033841; /// NP_572882;, nucleotide= NM_001038752; /// NM_132654;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // non-traceable author
FlyMine data for FBgn0026749.
VDRC has 5 RNAi stocks for FBgn0026749 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain540 ± 74 of 4 2.10Up
Head300 ± 74 of 4 1.20None
Eye273 ± 154 of 4 1.05None
Thoracicoabdominal ganglion492 ± 114 of 4 1.90Up
Salivary gland303 ± 64 of 4 1.16None
Crop323 ± 74 of 4 1.20Up
Midgut457 ± 104 of 4 1.80Up
Tubule491 ± 134 of 4 1.90Up
Hindgut407 ± 144 of 4 1.60Up
Heart251 ± 114 of 4 0.96None
Fat body188 ± 104 of 4 0.72Down
Ovary349 ± 44 of 4 1.30Up
Testis45 ± 24 of 4 0.20Down
Male accessory glands349 ± 84 of 4 1.30Up
Virgin spermatheca346 ± 164 of 4 1.33Up
Mated spermatheca285 ± 44 of 4 1.09None
Adult carcass272 ± 74 of 4 1.00None
Larval CNS327 ± 84 of 4 1.25Up
Larval Salivary gland216 ± 54 of 4 0.83None
Larval midgut290 ± 244 of 4 1.11None
Larval tubule514 ± 64 of 4 2.00Up
Larval hindgut292 ± 124 of 4 1.12None
Larval fat body164 ± 164 of 4 0.60Down
Larval trachea293 ± 124 of 4 1.12None
Larval carcass369 ± 234 of 4 1.42Up
S2 cells (growing)171 ± 14 of 4 0.66Down
Whole fly261 ± 144 of 4

Looking for CG1989-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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