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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1994-RA through 18771 annotations produced 1 hits



lethal (1) G0020 (l(1)G0020):

Annotation Number : CG1994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027330
Gbrowse : chrX:8610746-8614276 (-) // 100.0 //
Probeset : 1631248_at
Accessions : protein= NP_572503;, nucleotide= NM_132275;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0027330.
BioGrid reports that CG1994 interacts with CG8322 CG5890 .
VDRC has 1 RNAi stocks for FBgn0027330 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 4 0.30Down
Head25 ± 24 of 4 0.30Down
Eye18 ± 14 of 4 0.23Down
Thoracicoabdominal ganglion42 ± 24 of 4 0.50Down
Salivary gland25 ± 53 of 4 0.31Down
Crop36 ± 14 of 4 0.40Down
Midgut33 ± 24 of 4 0.40Down
Tubule40 ± 84 of 4 0.50Down
Hindgut27 ± 24 of 4 0.30Down
Heart23 ± 14 of 4 0.28Down
Fat body44 ± 54 of 4 0.55Down
Ovary172 ± 44 of 4 2.10Up
Testis15 ± 23 of 4 0.20Down
Male accessory glands63 ± 24 of 4 0.80None
Virgin spermatheca28 ± 34 of 4 0.34Down
Mated spermatheca50 ± 34 of 4 0.62Down
Adult carcass35 ± 44 of 4 0.40Down
Larval CNS125 ± 44 of 4 1.52Up
Larval Salivary gland77 ± 44 of 4 0.94None
Larval midgut34 ± 24 of 4 0.42Down
Larval tubule17 ± 14 of 4 0.20Down
Larval hindgut52 ± 84 of 4 0.64None
Larval fat body17 ± 13 of 4 0.20Down
Larval trachea97 ± 224 of 4 1.18None
Larval carcass79 ± 144 of 4 0.97None
S2 cells (growing)168 ± 74 of 4 2.05Up
Whole fly82 ± 94 of 4

Looking for CG1994-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime