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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2004-RA through 18771 annotations produced 1 hits



(CG2004):

Annotation Number : CG2004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030060
Gbrowse : chrX:8606501-8608665 (-) // 99.69 //
Probeset : 1637125_at
Accessions : protein= NP_572501;, nucleotide= NM_132273;
FlyMine data for FBgn0030060.
VDRC has 2 RNAi stocks for FBgn0030060 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 ± 24 of 4 0.60Down
Head243 ± 194 of 4 1.20None
Eye221 ± 174 of 4 1.08None
Thoracicoabdominal ganglion139 ± 84 of 4 0.70Down
Salivary gland744 ± 254 of 4 3.64Up
Crop255 ± 24 of 4 1.30Up
Midgut252 ± 214 of 4 1.20None
Tubule245 ± 284 of 4 1.20None
Hindgut178 ± 54 of 4 0.90None
Heart253 ± 274 of 4 1.24None
Fat body278 ± 214 of 4 1.36Up
Ovary230 ± 44 of 4 1.10None
Testis44 ± 34 of 4 0.20Down
Male accessory glands532 ± 384 of 4 2.60Up
Virgin spermatheca512 ± 264 of 4 2.50Up
Mated spermatheca378 ± 144 of 4 1.85Up
Adult carcass212 ± 44 of 4 1.00None
Larval CNS179 ± 74 of 4 0.88None
Larval Salivary gland942 ± 404 of 4 4.61Up
Larval midgut77 ± 74 of 4 0.38Down
Larval tubule96 ± 64 of 4 0.50Down
Larval hindgut126 ± 134 of 4 0.62Down
Larval fat body54 ± 74 of 4 0.30Down
Larval trachea279 ± 284 of 4 1.37Up
Larval carcass148 ± 114 of 4 0.73Down
S2 cells (growing)297 ± 34 of 4 1.46Up
Whole fly204 ± 104 of 4

Looking for CG2004-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime