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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2009-RA through 18771 annotations produced 1 hits



bip2 (bip2):

Annotation Number : CG2009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026262
Gbrowse : chr4:480507-487450 (-) // 100.0 //
Probeset : 1639551_at
Accessions : protein= NP_651923;, nucleotide= NM_143666;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005669 // transcription factor TFIID complex // non-traceable auth
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0026262.
BDGP gene expression has embryonic in situ data for bip2: 9 pix of staining in 7 body parts.
BioGrid reports that CG2009 interacts with CG5738 CG2275 CG3217 CG4213 CG5393 CG6163 CG6660 CG6664 CG7574 CG9740 CG33261 Dmel CG17172 .
VDRC has 3 RNAi stocks for FBgn0026262 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain875 234 of 4 2.70Up
Head337 154 of 4 1.00None
Eye423 104 of 4 1.31Up
Thoracicoabdominal ganglion755 64 of 4 2.30Up
Salivary gland474 94 of 4 1.47Up
Crop360 124 of 4 1.10Up
Midgut284 54 of 4 0.90Down
Tubule188 44 of 4 0.60Down
Hindgut338 104 of 4 1.00None
Heart381 114 of 4 1.18Up
Fat body309 174 of 4 0.96None
Ovary580 214 of 4 1.80Up
Testis214 34 of 4 0.70Down
Male accessory glands576 204 of 4 1.80Up
Virgin spermatheca310 104 of 4 0.96None
Mated spermatheca340 154 of 4 1.05None
Adult carcass297 84 of 4 0.90None
Larval CNS729 244 of 4 2.26Up
Larval Salivary gland386 204 of 4 1.20None
Larval midgut265 64 of 4 0.82Down
Larval tubule345 84 of 4 1.10None
Larval hindgut363 54 of 4 1.13Up
Larval fat body277 184 of 4 0.90None
Larval trachea717 224 of 4 2.22Up
Larval carcass347 94 of 4 1.07None
S2 cells (growing)375 74 of 4 1.16Up
Whole fly323 44 of 4

Looking for CG2009-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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