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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2013-RA through 18771 annotations produced 1 hits



Ubiquitin conjugating enzyme (UbcD6):

Annotation Number : CG2013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004436
Gbrowse : chr3R:775875-778406 (-) // 100.0 //
Probeset : 1630287_at
Accessions : protein= NP_001163508; /// NP_524230;, nucleotide= NM_001170037; /// NM_079506;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0004436.
Homophila reports that CG2013 is a close match (1e-31) to human gene RAD6A;UBE2A (NP_861442), a gene associated with Mental retardation, X-linked syndromic (3).
TRiP has 1 RNAi stocks for FBgn0004436 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004436 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain343 114 of 4 0.90None
Head336 524 of 4 0.90None
Eye476 574 of 4 1.22None
Thoracicoabdominal ganglion262 254 of 4 0.70Down
Salivary gland227 114 of 4 0.58Down
Crop451 204 of 4 1.20None
Midgut384 104 of 4 1.00None
Tubule164 124 of 4 0.40Down
Hindgut336 104 of 4 0.90Down
Heart329 114 of 4 0.85Down
Fat body279 364 of 4 0.72Down
Ovary483 24 of 4 1.20Up
Testis357 64 of 4 0.90None
Male accessory glands369 284 of 4 0.90None
Virgin spermatheca139 64 of 4 0.36Down
Mated spermatheca125 64 of 4 0.32Down
Adult carcass501 224 of 4 1.30Up
Larval CNS188 94 of 4 0.48Down
Larval Salivary gland449 394 of 4 1.15None
Larval midgut237 104 of 4 0.61Down
Larval tubule611 194 of 4 1.60Up
Larval hindgut317 94 of 4 0.81Down
Larval fat body354 124 of 4 0.90None
Larval trachea283 234 of 4 0.73Down
Larval carcass640 684 of 4 1.64Up
S2 cells (growing)584 84 of 4 1.50Up
Whole fly390 174 of 4

Looking for CG2013-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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