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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2023-RA through 18771 annotations produced 1 hits


Annotation Number : CG2023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037383
Gbrowse : chr3R:1649426-1650226 (-) // 100.0 //
Probeset : 1631062_at
Accessions : protein= NP_649595;, nucleotide= NM_141338;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037383.
BioGrid reports that CG2023 interacts with CG2336 .
TRiP has 1 RNAi stocks for FBgn0037383 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037383 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 14 of 4 0.70Down
Head38 24 of 4 0.50Down
Eye33 24 of 4 0.42Down
Thoracicoabdominal ganglion47 04 of 4 0.60Down
Salivary gland196 114 of 4 2.50Up
Crop42 24 of 4 0.50Down
Midgut62 44 of 4 0.80None
Tubule16 13 of 4 0.20Down
Hindgut33 14 of 4 0.40Down
Heart38 24 of 4 0.49Down
Fat body40 54 of 4 0.52Down
Ovary161 44 of 4 2.10Up
Testis90 34 of 4 1.20None
Male accessory glands94 74 of 4 1.20None
Virgin spermatheca29 24 of 4 0.37Down
Mated spermatheca36 34 of 4 0.46Down
Adult carcass39 24 of 4 0.50Down
Larval CNS32 24 of 4 0.42Down
Larval Salivary gland301 344 of 4 3.83Up
Larval midgut35 24 of 4 0.45Down
Larval tubule41 14 of 4 0.50Down
Larval hindgut43 34 of 4 0.55Down
Larval fat body52 44 of 4 0.70Down
Larval trachea58 34 of 4 0.74None
Larval carcass52 14 of 4 0.66Down
S2 cells (growing)68 34 of 4 0.87None
Whole fly78 74 of 4

Looking for CG2023-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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