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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2028-RB through 18771 annotations produced 1 hits



Casein kinase Ialpha (CkIalpha):

Annotation Number : CG2028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015024
Gbrowse : chrX:12547815-12551318 (+) // 100.0 //
Probeset : 1623403_s_at
Accessions : protein= NP_001162737; /// NP_511140; /// NP_727631; /// NP_727632;, nucleotide= NM_001169266; /// NM_078585; /// NM_167331; /// NM_167332;
Pathway : engulfment // inferred from mutant phenotype /// 0007224 // smoothened signaling pathway // traceable author statement
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0015024.
BDGP gene expression has embryonic in situ data for CkIalpha: 8 pix of staining in 1 body parts.
Homophila reports that CG2028 is a close match (2e-40) to human gene SCA11;TTBK2 (NP_775771), a gene associated with Spinocerebellar ataxia-11, 604432 (3).
BioGrid reports that CG2028 interacts with CG32635 .
TRiP has 3 RNAi stocks for FBgn0015024 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015024 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain789 214 of 4 2.40Up
Head461 314 of 4 1.40Up
Eye938 314 of 4 2.87Up
Thoracicoabdominal ganglion669 84 of 4 2.00Up
Salivary gland318 194 of 4 0.97None
Crop525 154 of 4 1.60Up
Midgut248 134 of 4 0.80Down
Tubule358 184 of 4 1.10None
Hindgut322 274 of 4 1.00None
Heart625 544 of 4 1.91Up
Fat body455 1034 of 4 1.39None
Ovary574 134 of 4 1.80Up
Testis117 84 of 4 0.40Down
Male accessory glands282 134 of 4 0.90None
Virgin spermatheca753 514 of 4 2.30Up
Mated spermatheca634 334 of 4 1.94Up
Adult carcass219 134 of 4 0.70Down
Larval CNS592 1264 of 4 1.81Up
Larval Salivary gland376 384 of 4 1.15None
Larval midgut334 224 of 4 1.02None
Larval tubule399 184 of 4 1.20None
Larval hindgut416 224 of 4 1.27Up
Larval fat body304 224 of 4 0.90None
Larval trachea491 354 of 4 1.50Up
Larval carcass378 224 of 4 1.16None
S2 cells (growing)178 64 of 4 0.55Down
Whole fly327 234 of 4

Looking for CG2028-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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