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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2040-RB through 18771 annotations produced 1 hits



hikaru genki (hig):

Annotation Number : CG2040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010114
Gbrowse : chr2R:5115287-5134752 (-) // 100.0 //
Probeset : 1636585_a_at
Accessions : protein= NP_001014514; /// NP_525110; /// NP_724772; /// NP_724773;, nucleotide= NM_001014514; /// NM_080371; /// NM_165666; /// NM_165667;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
FlyMine data for FBgn0010114.
BDGP gene expression has embryonic in situ data for hig: 17 pix of staining in 11 body parts.
Homophila reports that CG2040 is a close match (2e-11) to human gene APOH (NP_000033), a gene associated with [Apolipoprotein H deficiency] (3).
BioGrid reports that CG2040 interacts with Dmel CG34398 .
TRiP has 1 RNAi stocks for FBgn0010114 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1854 334 of 425.80Up
Head618 214 of 4 8.60Up
Eye235 144 of 4 3.27Up
Thoracicoabdominal ganglion2337 484 of 432.50Up
Salivary gland7 20 of 4 0.11Down
Crop3 11 of 4 0.00Down
Midgut4 13 of 4 0.10Down
Tubule3 00 of 4 0.00Down
Hindgut3 00 of 4 0.10Down
Heart3 01 of 4 0.05Down
Fat body7 53 of 4 0.11Down
Ovary0 00 of 4 0.00Down
Testis5 11 of 4 0.10Down
Male accessory glands7 11 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.04Down
Mated spermatheca3 11 of 4 0.05Down
Adult carcass24 34 of 4 0.30Down
Larval CNS160 464 of 4 2.24Up
Larval Salivary gland6 21 of 4 0.08Down
Larval midgut1 00 of 4 0.02Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut3 12 of 4 0.05Down
Larval fat body3 00 of 4 0.00Down
Larval trachea5 41 of 4 0.07Down
Larval carcass3 00 of 4 0.05Down
S2 cells (growing)2 01 of 4 0.04Down
Whole fly71 84 of 4

Looking for CG2040-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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