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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2041-RA through 18771 annotations produced 1 hits



legless (lgs):

Annotation Number : CG2041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039907
Gbrowse : chr4:457582-464533 (-) // 99.89 //
Probeset : 1634963_at
Accessions : protein= NP_651922;, nucleotide= NM_143665;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008013 // beta-catenin binding // inferred from ph
FlyMine data for FBgn0039907.
BDGP gene expression has embryonic in situ data for lgs: 16 pix of staining in 5 body parts.
BioGrid reports that CG2041 interacts with CG11579 CG4889 CG11579 CG11518 .
TRiP has 1 RNAi stocks for FBgn0039907 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039907 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain461 ± 84 of 4 2.30Up
Head231 ± 114 of 4 1.20None
Eye138 ± 64 of 4 0.70Down
Thoracicoabdominal ganglion371 ± 64 of 4 1.90Up
Salivary gland232 ± 124 of 4 1.17None
Crop237 ± 84 of 4 1.20Up
Midgut142 ± 14 of 4 0.70Down
Tubule141 ± 44 of 4 0.70Down
Hindgut188 ± 54 of 4 0.90None
Heart116 ± 74 of 4 0.58Down
Fat body170 ± 64 of 4 0.85None
Ovary325 ± 44 of 4 1.60Up
Testis420 ± 194 of 4 2.10Up
Male accessory glands195 ± 34 of 4 1.00None
Virgin spermatheca181 ± 94 of 4 0.91None
Mated spermatheca188 ± 114 of 4 0.94None
Adult carcass170 ± 94 of 4 0.90None
Larval CNS339 ± 124 of 4 1.70Up
Larval Salivary gland243 ± 54 of 4 1.22Up
Larval midgut139 ± 124 of 4 0.70Down
Larval tubule227 ± 54 of 4 1.10None
Larval hindgut213 ± 54 of 4 1.07None
Larval fat body252 ± 114 of 4 1.30Up
Larval trachea168 ± 84 of 4 0.84None
Larval carcass285 ± 34 of 4 1.43Up
S2 cells (growing)238 ± 64 of 4 1.20Up
Whole fly199 ± 114 of 4

Looking for CG2041-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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