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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2044-RA through 18771 annotations produced 1 hits

/// cuticle p. IV (CG11018 /// Lcp4):

Annotation Number : CG2044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002535
Gbrowse : chr2R:4325169-4325908 (+) // 100.0 //
Probeset : 1630238_at
Accessions : protein= NP_476622;, nucleotide= NM_057274;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0002535.
TRiP has 1 RNAi stocks for FBgn0002535 available for purchase.
VDRC has 4 RNAi stocks for FBgn0002535 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 3.50None
Head0 00 of 4 1.30None
Eye269 1184 of 4449.04None
Thoracicoabdominal ganglion0 00 of 4 1.10None
Salivary gland3 10 of 4 5.17None
Crop0 00 of 4 1.50None
Midgut0 00 of 4 1.20None
Tubule2 00 of 4 3.40Up
Hindgut1 00 of 4 2.40None
Heart4 11 of 4 7.54None
Fat body5 51 of 4 8.79None
Ovary1 10 of 4 2.10None
Testis1 00 of 4 2.50None
Male accessory glands2 10 of 4 4.10None
Virgin spermatheca1 00 of 4 2.75None
Mated spermatheca3 11 of 4 5.63None
Adult carcass0 00 of 4 1.50None
Larval CNS13 153 of 421.92None
Larval Salivary gland5 41 of 4 9.29None
Larval midgut3 10 of 4 6.29None
Larval tubule1 00 of 4 2.80None
Larval hindgut3798 2104 of 46331.21Up
Larval fat body23 112 of 438.40None
Larval trachea6057 5484 of 410095.21Up
Larval carcass4441 4824 of 47402.67Up
S2 cells (growing)0 00 of 4 0.88None
Whole fly0 00 of 4

Looking for CG2044-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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