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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2047-RA through 18771 annotations produced 1 hits

fushi-tarazu (ftz):

Annotation Number : CG2047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001077
Gbrowse : chr3R:2690045-2691950 (+) // 100.0 //
Probeset : 1637677_at
Accessions : protein= NP_477498;, nucleotide= NM_058150;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
FlyMine data for FBgn0001077.
Homophila reports that CG2047 is a close match (7e-11) to human gene HLXB9;HOXHB9;SCRA1 (NP_005506), a gene associated with Currarino syndrome, 176450 (3).
BioGrid reports that CG2047 interacts with CG31090 CG7047 CG31534 CG3218 CG4059 CG7958 CG9975 CG2328 CG4059 CG6494 CG9786 .
TRiP has 1 RNAi stocks for FBgn0001077 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001077 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30Down
Head1 00 of 4 0.40None
Eye1 00 of 4 0.41Down
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland0 00 of 4 0.20Down
Crop1 00 of 4 0.40Down
Midgut1 00 of 4 0.30Down
Tubule0 00 of 4 0.20Down
Hindgut0 00 of 4 0.20Down
Heart2 10 of 4 0.59None
Fat body0 00 of 4 0.17Down
Ovary0 00 of 4 0.20Down
Testis25 34 of 4 5.60Up
Male accessory glands0 00 of 4 0.20Down
Virgin spermatheca0 00 of 4 0.14Down
Mated spermatheca1 00 of 4 0.26Down
Adult carcass1 00 of 4 0.20Down
Larval CNS2 20 of 4 0.56None
Larval Salivary gland2 00 of 4 0.51None
Larval midgut0 00 of 4 0.17Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.16Down
Larval fat body5 20 of 4 1.20None
Larval trachea0 00 of 4 0.13Down
Larval carcass0 00 of 4 0.18Down
S2 cells (growing)0 00 of 4 0.12Down
Whole fly4 00 of 4

Looking for CG2047-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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