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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2048-RA through 18771 annotations produced 1 hits



double-time (dco):

Annotation Number : CG2048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002413
Gbrowse : chr3R:26880904-26886931 (-) // 100.0 //
Probeset : 1624447_s_at
Accessions : protein= NP_524602; /// NP_733414; /// NP_733415;, nucleotide= NM_079863; /// NM_170535; /// NM_170536;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005737 // cyt
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0002413.
BDGP gene expression has embryonic in situ data for dco: 36 pix of staining in 23 body parts.
Homophila reports that CG2048 is a close match (4e-41) to human gene SCA11;TTBK2 (NP_775771), a gene associated with Spinocerebellar ataxia-11, 604432 (3).
BioGrid reports that CG2048 interacts with CG2647 CG2647 CG2647 CG3412 .
TRiP has 3 RNAi stocks for FBgn0002413 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain409 124 of 4 1.20None
Head223 54 of 4 0.70Down
Eye526 94 of 4 1.56Up
Thoracicoabdominal ganglion406 154 of 4 1.20None
Salivary gland387 354 of 4 1.14None
Crop391 54 of 4 1.20None
Midgut237 54 of 4 0.70Down
Tubule183 44 of 4 0.50Down
Hindgut307 114 of 4 0.90None
Heart260 54 of 4 0.77None
Fat body188 294 of 4 0.56Down
Ovary798 184 of 4 2.40Up
Testis68 44 of 4 0.20Down
Male accessory glands377 174 of 4 1.10None
Virgin spermatheca158 64 of 4 0.47Down
Mated spermatheca161 44 of 4 0.48Down
Adult carcass197 134 of 4 0.60Down
Larval CNS475 284 of 4 1.40Up
Larval Salivary gland194 64 of 4 0.57Down
Larval midgut204 94 of 4 0.60Down
Larval tubule333 14 of 4 1.00None
Larval hindgut327 134 of 4 0.97None
Larval fat body264 324 of 4 0.80None
Larval trachea493 224 of 4 1.46Up
Larval carcass307 104 of 4 0.91None
S2 cells (growing)513 74 of 4 1.52Up
Whole fly338 294 of 4

Looking for CG2048-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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