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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2050-RA through 18771 annotations produced 1 hits



modulo (mod):

Annotation Number : CG2050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002780
Gbrowse : chr3R:27877793-27880696 (+) // 100.0 //
Probeset : 1634912_at
Accessions : protein= NP_524614;, nucleotide= NM_079875;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0002780.
BDGP gene expression has embryonic in situ data for mod: 4 pix of staining in 1 body parts.
BioGrid reports that CG2050 interacts with CG1395 CG1395 .
TRiP has 3 RNAi stocks for FBgn0002780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain319 34 of 4 0.20Down
Head470 194 of 4 0.30Down
Eye327 174 of 4 0.22Down
Thoracicoabdominal ganglion514 124 of 4 0.40Down
Salivary gland696 294 of 4 0.48Down
Crop741 154 of 4 0.50Down
Midgut665 404 of 4 0.50Down
Tubule575 1114 of 4 0.40Down
Hindgut424 224 of 4 0.30Down
Heart515 124 of 4 0.35Down
Fat body845 894 of 4 0.58Down
Ovary2065 494 of 4 1.40Up
Testis135 34 of 4 0.10Down
Male accessory glands1933 854 of 4 1.30Up
Virgin spermatheca809 284 of 4 0.55Down
Mated spermatheca1205 674 of 4 0.83Down
Adult carcass498 414 of 4 0.30Down
Larval CNS1336 254 of 4 0.92Down
Larval Salivary gland1431 964 of 4 0.98None
Larval midgut495 474 of 4 0.34Down
Larval tubule287 94 of 4 0.20Down
Larval hindgut798 924 of 4 0.55Down
Larval fat body357 414 of 4 0.20Down
Larval trachea1522 2674 of 4 1.04None
Larval carcass1252 2684 of 4 0.86None
S2 cells (growing)1288 44 of 4 0.88Down
Whole fly1459 384 of 4

Looking for CG2050-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime