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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2051-RC through 18771 annotations produced 2 hits



(CG2051):

Annotation Number : CG2051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037376
Gbrowse : chr3R:1613921-1614524 (-) // 100.0 //
Probeset : 1629635_at
Accessions : protein= NP_649587;, nucleotide= NM_141330;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone
FlyMine data for FBgn0037376.
BDGP gene expression has embryonic in situ data for CG2051: 26 pix of staining in 7 body parts.
TRiP has 2 RNAi stocks for FBgn0037376 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.00None
Head3 ± 10 of 4 1.90None
Eye3 ± 11 of 4 1.53None
Thoracicoabdominal ganglion3 ± 10 of 4 1.70None
Salivary gland11 ± 40 of 4 5.99None
Crop3 ± 10 of 4 1.50None
Midgut4 ± 10 of 4 2.10None
Tubule2 ± 00 of 4 1.40None
Hindgut2 ± 10 of 4 1.30None
Heart1 ± 00 of 4 0.82None
Fat body4 ± 10 of 4 2.20Up
Ovary2 ± 00 of 4 1.20None
Testis2 ± 00 of 4 1.10None
Male accessory glands4 ± 10 of 4 2.00None
Virgin spermatheca3 ± 10 of 4 1.56None
Mated spermatheca3 ± 10 of 4 1.56None
Adult carcass5 ± 20 of 4 2.60None
Larval CNS4 ± 13 of 4 2.13Up
Larval Salivary gland3 ± 01 of 4 1.65None
Larval midgut2 ± 10 of 4 1.20None
Larval tubule4 ± 00 of 4 2.30Up
Larval hindgut2 ± 00 of 4 1.06None
Larval fat body5 ± 20 of 4 2.50None
Larval trachea3 ± 10 of 4 1.90None
Larval carcass2 ± 00 of 4 1.03None
S2 cells (growing)3 ± 00 of 4 1.67None
Whole fly2 ± 00 of 4



(CG2051):

Annotation Number : CG2051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037376
Gbrowse : chr3R:1613921-1614524 (-) // 100.0 //
Probeset : 1634321_s_at
Accessions : protein= NP_649587;, nucleotide= NM_141330;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004402 // histone acetyltransferase activity // inferred from sequence or structural similarity /// 0004402 // histone
FlyMine data for FBgn0037376.
BDGP gene expression has embryonic in situ data for CG2051: 26 pix of staining in 7 body parts.
TRiP has 2 RNAi stocks for FBgn0037376 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 34 of 4 0.60Down
Head35 ± 14 of 4 0.30Down
Eye40 ± 14 of 4 0.32Down
Thoracicoabdominal ganglion42 ± 34 of 4 0.30Down
Salivary gland40 ± 24 of 4 0.32Down
Crop40 ± 54 of 4 0.30Down
Midgut59 ± 54 of 4 0.50Down
Tubule10 ± 01 of 4 0.10Down
Hindgut43 ± 04 of 4 0.30Down
Heart30 ± 24 of 4 0.24Down
Fat body28 ± 74 of 4 0.22Down
Ovary266 ± 104 of 4 2.10Up
Testis206 ± 134 of 4 1.70Up
Male accessory glands23 ± 34 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.04Down
Mated spermatheca4 ± 10 of 4 0.03Down
Adult carcass31 ± 22 of 4 0.30Down
Larval CNS156 ± 154 of 4 1.25None
Larval Salivary gland67 ± 134 of 4 0.53Down
Larval midgut33 ± 14 of 4 0.27Down
Larval tubule80 ± 24 of 4 0.60None
Larval hindgut37 ± 44 of 4 0.30Down
Larval fat body74 ± 174 of 4 0.60None
Larval trachea65 ± 74 of 4 0.52Down
Larval carcass41 ± 74 of 4 0.33Down
S2 cells (growing)258 ± 94 of 4 2.07Up
Whole fly125 ± 144 of 4

Looking for CG2051-RC. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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