FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2054-RA through 18771 annotations produced 1 hits

Chitinase 2 (Cht2):

Annotation Number : CG2054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022702
Gbrowse : chr3L:1752545-1755663 (-) // 100.0 //
Probeset : 1637421_at
Accessions : protein= NP_477298;, nucleotide= NM_057950;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0022702.
BDGP gene expression has embryonic in situ data for Cht2: 15 pix of staining in 9 body parts.
Homophila reports that CG2054 is a close match (1e-57) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
TRiP has 1 RNAi stocks for FBgn0022702 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022702 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	70 ± 3	4 of 4	0.50	Down
Head	36 ± 3	4 of 4	0.30	Down
Eye	46 ± 3	4 of 4	0.34	Down
Thoracicoabdominal ganglion	58 ± 5	4 of 4	0.40	Down
Salivary gland	16 ± 5	0 of 4	0.12	Down
Crop	4 ± 3	0 of 4	0.00	Down
Midgut	48 ± 2	4 of 4	0.40	Down
Tubule	5 ± 2	0 of 4	0.00	Down
Hindgut	15 ± 2	0 of 4	0.10	Down
Heart	34 ± 4	4 of 4	0.26	Down
Fat body	23 ± 5	0 of 4	0.18	Down
Ovary	264 ± 6	4 of 4	2.00	Up
Testis	17 ± 1	4 of 4	0.10	Down
Male accessory glands	21 ± 3	1 of 4	0.20	Down
Virgin spermatheca	6 ± 1	0 of 4	0.05	Down
Mated spermatheca	6 ± 1	0 of 4	0.05	Down
Adult carcass	43 ± 4	2 of 4	0.30	Down
Larval CNS	200 ± 23	4 of 4	1.50	Up
Larval Salivary gland	21 ± 1	2 of 4	0.16	Down
Larval midgut	40 ± 3	3 of 4	0.31	Down
Larval tubule	8 ± 1	0 of 4	0.10	Down
Larval hindgut	310 ± 11	4 of 4	2.32	Up
Larval fat body	13 ± 1	0 of 4	0.10	Down
Larval trachea	862 ± 58	4 of 4	6.44	Up
Larval carcass	754 ± 38	4 of 4	5.64	Up
S2 cells (growing)	11 ± 0	1 of 4	0.08	Down
Whole fly	133 ± 10	4 of 4

Looking for CG2054-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720