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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2061-RA through 18771 annotations produced 1 hits



(CG2061):

Annotation Number : CG2061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027498
Gbrowse : chrX:10986525-10988697 (+) // 100.0 //
Probeset : 1630779_s_at
Accessions : protein= NP_572682; /// NP_727485; /// NP_727486;, nucleotide= NM_132454; /// NM_167264; /// NM_167265;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity
FlyMine data for FBgn0027498.
BioGrid reports that CG2061 interacts with CG32694 CG9986 .
TRiP has 2 RNAi stocks for FBgn0027498 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027498 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain314 ± 94 of 4 2.70Up
Head101 ± 94 of 4 0.90None
Eye73 ± 84 of 4 0.64None
Thoracicoabdominal ganglion269 ± 184 of 4 2.30Up
Salivary gland52 ± 44 of 4 0.46Down
Crop64 ± 14 of 4 0.60Down
Midgut46 ± 34 of 4 0.40Down
Tubule27 ± 24 of 4 0.20Down
Hindgut42 ± 24 of 4 0.40Down
Heart32 ± 34 of 4 0.28Down
Fat body37 ± 54 of 4 0.33Down
Ovary186 ± 54 of 4 1.60Up
Testis415 ± 224 of 4 3.60Up
Male accessory glands34 ± 34 of 4 0.30Down
Virgin spermatheca23 ± 24 of 4 0.21Down
Mated spermatheca31 ± 24 of 4 0.28Down
Adult carcass50 ± 14 of 4 0.40Down
Larval CNS369 ± 54 of 4 3.20Up
Larval Salivary gland39 ± 14 of 4 0.34Down
Larval midgut30 ± 22 of 4 0.26Down
Larval tubule24 ± 24 of 4 0.20Down
Larval hindgut47 ± 14 of 4 0.41Down
Larval fat body87 ± 264 of 4 0.80None
Larval trachea83 ± 94 of 4 0.72None
Larval carcass49 ± 54 of 4 0.43Down
S2 cells (growing)97 ± 24 of 4 0.84None
Whole fly115 ± 144 of 4

Looking for CG2061-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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