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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2062-RA through 18771 annotations produced 1 hits



Cytochrome P450-4e1 (Cyp4e1):

Annotation Number : CG2062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015034
Gbrowse : chr2R:4334973-4337250 (+) // 100.0 //
Probeset : 1639539_at
Accessions : protein= NP_524771;, nucleotide= NM_080032;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015034.
Homophila reports that CG2062 is a close match (9e-11) to human gene CYP2C9 (NP_000762), a gene associated with Tolbutamide poor metabolizer (3);Warfarin sensitivity, 122700 (3).
VDRC has 2 RNAi stocks for FBgn0015034 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head138 ± 134 of 4 1.80Up
Eye150 ± 64 of 4 1.92Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.05Down
Crop639 ± 194 of 4 8.20Up
Midgut19 ± 04 of 4 0.30Down
Tubule326 ± 624 of 4 4.20Up
Hindgut115 ± 104 of 4 1.50Up
Heart411 ± 624 of 4 5.25Up
Fat body426 ± 534 of 4 5.43Up
Ovary2 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands1098 ± 1234 of 414.00Up
Virgin spermatheca30 ± 44 of 4 0.39Down
Mated spermatheca14 ± 14 of 4 0.19Down
Adult carcass377 ± 204 of 4 4.80Up
Larval CNS6 ± 14 of 4 0.08Down
Larval Salivary gland1 ± 10 of 4 0.02Down
Larval midgut3 ± 10 of 4 0.05Down
Larval tubule24 ± 44 of 4 0.30Down
Larval hindgut10 ± 23 of 4 0.14Down
Larval fat body7 ± 00 of 4 0.10Down
Larval trachea17 ± 84 of 4 0.23Down
Larval carcass91 ± 64 of 4 1.16None
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly78 ± 44 of 4

Looking for CG2062-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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