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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2065-RA through 18771 annotations produced 1 hits



(CG2065):

Annotation Number : CG2065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033204
Gbrowse : chr2R:3551290-3552774 (+) // 99.5 //
Probeset : 1630212_at
Accessions : protein= NP_610309;, nucleotide= NM_136465;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0033204.
BDGP gene expression has embryonic in situ data for CG2065: 36 pix of staining in 3 body parts.
Homophila reports that CG2065 is a close match (9e-46) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
TRiP has 1 RNAi stocks for FBgn0033204 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 34 of 4 0.70Down
Head137 ± 104 of 4 2.60Up
Eye77 ± 104 of 4 1.44None
Thoracicoabdominal ganglion93 ± 74 of 4 1.70Up
Salivary gland44 ± 44 of 4 0.83None
Crop369 ± 214 of 4 6.90Up
Midgut150 ± 134 of 4 2.80Up
Tubule129 ± 64 of 4 2.40Up
Hindgut218 ± 94 of 4 4.10Up
Heart229 ± 254 of 4 4.26Up
Fat body185 ± 274 of 4 3.44Up
Ovary9 ± 03 of 4 0.20Down
Testis141 ± 34 of 4 2.60Up
Male accessory glands34 ± 103 of 4 0.60None
Virgin spermatheca109 ± 44 of 4 2.03Up
Mated spermatheca187 ± 214 of 4 3.48Up
Adult carcass166 ± 124 of 4 3.10Up
Larval CNS37 ± 44 of 4 0.69Down
Larval Salivary gland11 ± 24 of 4 0.21Down
Larval midgut334 ± 344 of 4 6.22Up
Larval tubule23 ± 34 of 4 0.40Down
Larval hindgut172 ± 74 of 4 3.21Up
Larval fat body54 ± 04 of 4 1.00None
Larval trachea62 ± 104 of 4 1.16None
Larval carcass155 ± 134 of 4 2.90Up
S2 cells (growing)270 ± 174 of 4 5.03Up
Whole fly53 ± 44 of 4

Looking for CG2065-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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