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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2069-RA through 18771 annotations produced 1 hits



Oseg4 (Oseg4):

Annotation Number : CG2069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035264
Gbrowse : chr3L:1730992-1735755 (-) // 100.0 //
Probeset : 1629688_at
Accessions : protein= NP_647653;, nucleotide= NM_139396;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0035264.
BDGP gene expression has embryonic in situ data for CG2069: 20 pix of staining in 14 body parts.
BioGrid reports that CG2069 interacts with CG8368 .
VDRC has 3 RNAi stocks for FBgn0035264 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.40Down
Head15 ± 11 of 4 1.00None
Eye15 ± 32 of 4 0.99None
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland2 ± 00 of 4 0.18Down
Crop3 ± 10 of 4 0.20Down
Midgut128 ± 34 of 4 8.20Up
Tubule6 ± 10 of 4 0.40Down
Hindgut9 ± 00 of 4 0.60Down
Heart3 ± 00 of 4 0.21Down
Fat body3 ± 20 of 4 0.22Down
Ovary7 ± 00 of 4 0.50Down
Testis12 ± 10 of 4 0.80None
Male accessory glands6 ± 10 of 4 0.40Down
Virgin spermatheca3 ± 10 of 4 0.19Down
Mated spermatheca2 ± 10 of 4 0.15Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS35 ± 14 of 4 2.25Up
Larval Salivary gland15 ± 20 of 4 0.98None
Larval midgut45 ± 63 of 4 2.86Up
Larval tubule6 ± 00 of 4 0.40Down
Larval hindgut7 ± 10 of 4 0.47Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea22 ± 34 of 4 1.45Up
Larval carcass16 ± 12 of 4 1.03None
S2 cells (growing)1 ± 00 of 4 0.09Down
Whole fly15 ± 01 of 4

Looking for CG2069-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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