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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2070-RA through 18771 annotations produced 1 hits



(CG2070):

Annotation Number : CG2070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033203
Gbrowse : chr2R:3549516-3550764 (+) // 100.0 //
Probeset : 1641371_at
Accessions : protein= NP_610308;, nucleotide= NM_136464;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0033203.
BDGP gene expression has embryonic in situ data for CG2070: 8 pix of staining in 1 body parts.
Homophila reports that CG2070 is a close match (1e-48) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
VDRC has 3 RNAi stocks for FBgn0033203 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.20Down
Head9 ± 12 of 4 0.30Down
Eye5 ± 01 of 4 0.16Down
Thoracicoabdominal ganglion9 ± 22 of 4 0.30Down
Salivary gland10 ± 40 of 4 0.33Down
Crop11 ± 31 of 4 0.30Down
Midgut6 ± 10 of 4 0.20Down
Tubule7 ± 10 of 4 0.20Down
Hindgut7 ± 00 of 4 0.20Down
Heart6 ± 12 of 4 0.19Down
Fat body30 ± 164 of 4 0.93None
Ovary3 ± 10 of 4 0.10Down
Testis9 ± 10 of 4 0.30Down
Male accessory glands14 ± 32 of 4 0.40Down
Virgin spermatheca5 ± 10 of 4 0.17Down
Mated spermatheca10 ± 30 of 4 0.31Down
Adult carcass286 ± 94 of 4 8.90Up
Larval CNS5 ± 21 of 4 0.18Down
Larval Salivary gland7 ± 20 of 4 0.22Down
Larval midgut10 ± 10 of 4 0.31Down
Larval tubule6 ± 00 of 4 0.20Down
Larval hindgut6 ± 00 of 4 0.19Down
Larval fat body8 ± 20 of 4 0.30Down
Larval trachea291 ± 754 of 4 9.01Up
Larval carcass141 ± 1034 of 4 4.39None
S2 cells (growing)8 ± 11 of 4 0.25Down
Whole fly32 ± 44 of 4

Looking for CG2070-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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