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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2075-RA through 18771 annotations produced 1 hits



always early (aly):

Annotation Number : CG2075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004372
Gbrowse : chr3L:3024128-3026521 (-) // 100.0 //
Probeset : 1627064_at
Accessions : protein= NP_524857;, nucleotide= NM_080118;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0000790 // nuclear chromatin // inferred from direct assay /// 00
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0004372.
BDGP gene expression has embryonic in situ data for aly: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0004372 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30Down
Head1 ± 00 of 4 0.20Down
Eye1 ± 00 of 4 0.24Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.40None
Salivary gland5 ± 30 of 4 0.83None
Crop2 ± 10 of 4 0.40None
Midgut4 ± 10 of 4 0.60None
Tubule3 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.20Down
Heart5 ± 00 of 4 0.79None
Fat body3 ± 20 of 4 0.52None
Ovary1 ± 00 of 4 0.10Down
Testis26 ± 14 of 4 4.20Up
Male accessory glands2 ± 10 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.23Down
Mated spermatheca3 ± 00 of 4 0.51None
Adult carcass3 ± 10 of 4 0.50None
Larval CNS1 ± 10 of 4 0.22Down
Larval Salivary gland5 ± 10 of 4 0.83None
Larval midgut3 ± 10 of 4 0.55None
Larval tubule2 ± 00 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.17Down
Larval fat body9 ± 21 of 4 1.50None
Larval trachea3 ± 11 of 4 0.50None
Larval carcass0 ± 00 of 4 0.15Down
S2 cells (growing)1 ± 00 of 4 0.30Down
Whole fly6 ± 10 of 4

Looking for CG2075-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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