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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2082-RA through 18771 annotations produced 1 hits



(CG2082):

Annotation Number : CG2082
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027608
Gbrowse : chr3R:1585283-1597617 (-) // 99.68 //
Probeset : 1633443_s_at
Accessions : protein= NP_001163513; /// NP_001163514; /// NP_001163515; /// NP_001163516; /// NP_001163517; /// NP_001163518; /// NP_001163519; /// NP_001163520; /// NP_649584; /// NP_730997; /// NP_730998; /// NP_731000;, nucleotide= NM_001170042; /// NM_001170043; /// NM_001170044; /// NM_001170045; /// NM_001170046; /// NM_001170047; /// NM_001170048; /// NM_001170049; /// NM_141327; /// NM_169099; /// NM_169100; /// NM_169102;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027608.
Homophila reports that CG2082 is a close match (1e-18) to human gene CMT4D;HMSNL;NDRG1 (NP_006087), a gene associated with Charcot-Marie-Tooth disease, type 4D, 601455 (3).
VDRC has 2 RNAi stocks for FBgn0027608 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1615 ± 164 of 410.70Up
Head847 ± 714 of 4 5.60Up
Eye1202 ± 534 of 4 7.97Up
Thoracicoabdominal ganglion919 ± 694 of 4 6.10Up
Salivary gland9 ± 30 of 4 0.06Down
Crop12 ± 23 of 4 0.10Down
Midgut21 ± 24 of 4 0.10Down
Tubule4 ± 00 of 4 0.00Down
Hindgut26 ± 24 of 4 0.20Down
Heart16 ± 13 of 4 0.11Down
Fat body18 ± 44 of 4 0.12Down
Ovary6 ± 02 of 4 0.00Down
Testis65 ± 44 of 4 0.40Down
Male accessory glands10 ± 20 of 4 0.10Down
Virgin spermatheca13 ± 11 of 4 0.09Down
Mated spermatheca15 ± 23 of 4 0.10Down
Adult carcass270 ± 224 of 4 1.80Up
Larval CNS190 ± 224 of 4 1.26Up
Larval Salivary gland9 ± 20 of 4 0.06Down
Larval midgut30 ± 34 of 4 0.20Down
Larval tubule15 ± 33 of 4 0.10Down
Larval hindgut83 ± 84 of 4 0.56Down
Larval fat body20 ± 21 of 4 0.10Down
Larval trachea29 ± 371 of 4 0.20Down
Larval carcass356 ± 1234 of 4 2.37None
S2 cells (growing)3 ± 10 of 4 0.02Down
Whole fly150 ± 44 of 4

Looking for CG2082-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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