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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2086-RA through 18771 annotations produced 1 hits

draper (drpr):

Annotation Number : CG2086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027594
Gbrowse : chr3L:1715593-1731093 (-) // 100.0 //
Probeset : 1638953_a_at
Accessions : protein= NP_477450; /// NP_728660;, nucleotide= NM_058102; /// NM_167911;
Pathway : 0031224 // intrinsic to membrane // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027594.
BDGP gene expression has embryonic in situ data for drpr: 12 pix of staining in 2 body parts.
Homophila reports that CG2086 is a close match (2e-11) to human gene CRB1;LCA8;RP12 (NP_957705), a gene associated with Leber congenital amaurosis VIII (3);Pigmented paravenous chorioretinal atrophy, 172870 (3);Retinitis pigmentosa-12, autosomal recessive, 600105 (3).
BioGrid reports that CG2086 interacts with CG9325 .
TRiP has 1 RNAi stocks for FBgn0027594 available for purchase.
VDRC has 4 RNAi stocks for FBgn0027594 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain622 364 of 4 2.20Up
Head324 144 of 4 1.10None
Eye592 524 of 4 2.09Up
Thoracicoabdominal ganglion591 254 of 4 2.10Up
Salivary gland430 184 of 4 1.52Up
Crop494 254 of 4 1.70Up
Midgut667 124 of 4 2.40Up
Tubule365 184 of 4 1.30Up
Hindgut724 144 of 4 2.60Up
Heart645 444 of 4 2.28Up
Fat body345 654 of 4 1.22None
Ovary423 94 of 4 1.50Up
Testis239 74 of 4 0.80None
Male accessory glands382 174 of 4 1.40Up
Virgin spermatheca302 214 of 4 1.07None
Mated spermatheca283 114 of 4 1.00None
Adult carcass280 114 of 4 1.00None
Larval CNS527 454 of 4 1.87Up
Larval Salivary gland528 154 of 4 1.87Up
Larval midgut631 554 of 4 2.23Up
Larval tubule861 524 of 4 3.00Up
Larval hindgut743 324 of 4 2.63Up
Larval fat body210 124 of 4 0.70Down
Larval trachea641 274 of 4 2.27Up
Larval carcass325 154 of 4 1.15None
S2 cells (growing)1088 144 of 4 3.85Up
Whole fly282 144 of 4

Looking for CG2086-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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