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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2093-RA through 18771 annotations produced 1 hits



CG2093 (Vps13):

Annotation Number : CG2093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033194
Gbrowse : chr2R:3454769-3468180 (+) // 100.0 //
Probeset : 1630935_at
Accessions : protein= NP_610299;, nucleotide= NM_136455;
FlyMine data for FBgn0033194.
Homophila reports that CG2093 is a close match (5e-12) to human gene COH1 (NP_056058), a gene associated with Cohen syndrome, 216550 (3).
TRiP has 1 RNAi stocks for FBgn0033194 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033194 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain260 ± 54 of 4 1.60Up
Head190 ± 54 of 4 1.20Up
Eye182 ± 164 of 4 1.13None
Thoracicoabdominal ganglion343 ± 184 of 4 2.10Up
Salivary gland342 ± 154 of 4 2.13Up
Crop492 ± 224 of 4 3.10Up
Midgut229 ± 34 of 4 1.40Up
Tubule468 ± 54 of 4 2.90Up
Hindgut354 ± 74 of 4 2.20Up
Heart340 ± 234 of 4 2.11Up
Fat body277 ± 344 of 4 1.72Up
Ovary157 ± 84 of 4 1.00None
Testis169 ± 124 of 4 1.10None
Male accessory glands302 ± 84 of 4 1.90Up
Virgin spermatheca266 ± 174 of 4 1.65Up
Mated spermatheca245 ± 154 of 4 1.53Up
Adult carcass265 ± 254 of 4 1.60Up
Larval CNS407 ± 224 of 4 2.53Up
Larval Salivary gland719 ± 184 of 4 4.47Up
Larval midgut228 ± 234 of 4 1.42None
Larval tubule1437 ± 394 of 4 8.90Up
Larval hindgut477 ± 214 of 4 2.97Up
Larval fat body253 ± 264 of 4 1.60Up
Larval trachea560 ± 464 of 4 3.48Up
Larval carcass580 ± 214 of 4 3.61Up
S2 cells (growing)437 ± 84 of 4 2.72Up
Whole fly160 ± 94 of 4

Looking for CG2093-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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