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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2107-RA through 18771 annotations produced 1 hits


Annotation Number : CG2107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035383
Gbrowse : chr3L:2981030-2983551 (+) // 100.0 //
Probeset : 1627839_at
Accessions : protein= NP_647756;, nucleotide= NM_139499;
Interpro : 0004095 // carnitine O-palmitoyltransferase activity // inferred from sequence or structural similarity /// 0004095 // c
FlyMine data for FBgn0035383.
BDGP gene expression has embryonic in situ data for CG2107: 4 pix of staining in 1 body parts.
Homophila reports that CG2107 is a close match (3e-54) to human gene CHAT;CMS1A2 (NP_066266), a gene associated with Myasthenic syndrome, congenital, associated with episodic apnea, 254210 (3).
BioGrid reports that CG2107 interacts with CG6164 CG8988 CG7221 CG8451 .

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 04 of 4 0.20Down
Head173 64 of 4 1.50Up
Eye138 74 of 4 1.19None
Thoracicoabdominal ganglion41 34 of 4 0.40Down
Salivary gland192 64 of 4 1.65Up
Crop277 54 of 4 2.40Up
Midgut190 34 of 4 1.60Up
Tubule151 14 of 4 1.30Up
Hindgut220 14 of 4 1.90Up
Heart369 144 of 4 3.17Up
Fat body622 304 of 4 5.35Up
Ovary105 14 of 4 0.90None
Testis12 10 of 4 0.10Down
Male accessory glands90 34 of 4 0.80Down
Virgin spermatheca541 254 of 4 4.65Up
Mated spermatheca481 244 of 4 4.13Up
Adult carcass260 34 of 4 2.20Up
Larval CNS82 34 of 4 0.71Down
Larval Salivary gland119 94 of 4 1.02None
Larval midgut262 54 of 4 2.25Up
Larval tubule151 44 of 4 1.30Up
Larval hindgut136 34 of 4 1.18None
Larval fat body218 264 of 4 1.90Up
Larval trachea118 84 of 4 1.01None
Larval carcass117 44 of 4 1.01None
S2 cells (growing)137 44 of 4 1.18None
Whole fly116 74 of 4

Looking for CG2107-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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