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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2116-RA through 18771 annotations produced 1 hits



(CG2116):

Annotation Number : CG2116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030003
Gbrowse : chrX:8023759-8025748 (+) // 100.0 //
Probeset : 1635358_at
Accessions : protein= NP_572444;, nucleotide= NM_132216;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0030003.
BDGP gene expression has embryonic in situ data for CG2116: 4 pix of staining in 1 body parts.
Homophila reports that CG2116 is a close match (4e-12) to human gene AITD3;ZFAT1;ZNF406 (NP_065914), a gene associated with {Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3).
BioGrid reports that CG2116 interacts with CG2238 CG3291 CG3605 CG4863 CG6846 CG8415 CG9277 CG9493 CG7977 .
TRiP has 2 RNAi stocks for FBgn0030003 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 44 of 4 0.60Down
Head63 44 of 4 0.60Down
Eye43 54 of 4 0.38Down
Thoracicoabdominal ganglion68 54 of 4 0.60Down
Salivary gland75 24 of 4 0.66Down
Crop105 74 of 4 0.90None
Midgut76 54 of 4 0.70Down
Tubule92 94 of 4 0.80Down
Hindgut85 54 of 4 0.70Down
Heart69 44 of 4 0.61Down
Fat body86 134 of 4 0.76Down
Ovary202 54 of 4 1.80Up
Testis29 24 of 4 0.30Down
Male accessory glands97 94 of 4 0.90None
Virgin spermatheca92 34 of 4 0.81None
Mated spermatheca78 24 of 4 0.69Down
Adult carcass65 24 of 4 0.60Down
Larval CNS105 54 of 4 0.92None
Larval Salivary gland123 124 of 4 1.08None
Larval midgut58 44 of 4 0.51Down
Larval tubule93 54 of 4 0.80None
Larval hindgut81 44 of 4 0.72Down
Larval fat body87 44 of 4 0.80Down
Larval trachea114 94 of 4 1.00None
Larval carcass127 134 of 4 1.12None
S2 cells (growing)67 04 of 4 0.59Down
Whole fly114 84 of 4

Looking for CG2116-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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