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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2120-RA through 18771 annotations produced 1 hits



(CG2120):

Annotation Number : CG2120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030005
Gbrowse : chrX:8029727-8030920 (+) // 100.0 //
Probeset : 1631576_at
Accessions : protein= NP_572446;, nucleotide= NM_132218;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0030005.
Homophila reports that CG2120 is a close match (7e-11) to human gene WT1 (NP_077744), a gene associated with Denys-Drash syndrome, 194080 (3);Frasier syndrome, 136680 (3);Mesangial sclerosis, isolated diffuse, 256370 (3);WAGR syndrome, 194072 (3);Wilms tumor, type 1, 194070 (3).
BioGrid reports that CG2120 interacts with CG6215 .
VDRC has 6 RNAi stocks for FBgn0030005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 12 of 4 0.20Down
Head12 ± 14 of 4 0.50Down
Eye15 ± 04 of 4 0.63Down
Thoracicoabdominal ganglion7 ± 02 of 4 0.30Down
Salivary gland14 ± 12 of 4 0.55Down
Crop237 ± 44 of 4 9.30Up
Midgut169 ± 144 of 4 6.70Up
Tubule9 ± 11 of 4 0.40Down
Hindgut65 ± 44 of 4 2.60Up
Heart3 ± 10 of 4 0.14Down
Fat body11 ± 32 of 4 0.44Down
Ovary3 ± 10 of 4 0.10Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands7 ± 21 of 4 0.30Down
Virgin spermatheca4 ± 00 of 4 0.16Down
Mated spermatheca4 ± 11 of 4 0.16Down
Adult carcass11 ± 43 of 4 0.40Down
Larval CNS6 ± 14 of 4 0.24Down
Larval Salivary gland10 ± 03 of 4 0.43Down
Larval midgut118 ± 84 of 4 4.66Up
Larval tubule9 ± 12 of 4 0.40Down
Larval hindgut10 ± 14 of 4 0.40Down
Larval fat body7 ± 10 of 4 0.30Down
Larval trachea3 ± 21 of 4 0.12Down
Larval carcass8 ± 01 of 4 0.32Down
S2 cells (growing)4 ± 01 of 4 0.17Down
Whole fly25 ± 34 of 4

Looking for CG2120-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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