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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2121-RA through 18771 annotations produced 1 hits



(CG2121):

Annotation Number : CG2121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033289
Gbrowse : chr2R:4283897-4298730 (-) // 100.0 //
Probeset : 1626452_at
Accessions : protein= NP_001137618; /// NP_610378;, nucleotide= NM_001144146; /// NM_136534;
FlyMine data for FBgn0033289.
VDRC has 2 RNAi stocks for FBgn0033289 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 4 0.20Down
Head245 104 of 4 6.80Up
Eye340 444 of 4 9.43Up
Thoracicoabdominal ganglion7 10 of 4 0.20Down
Salivary gland43 24 of 4 1.20None
Crop19 21 of 4 0.50Down
Midgut65 34 of 4 1.80Up
Tubule10 01 of 4 0.30Down
Hindgut10 32 of 4 0.30Down
Heart7 22 of 4 0.21Down
Fat body25 34 of 4 0.70Down
Ovary6 11 of 4 0.20Down
Testis11 04 of 4 0.30Down
Male accessory glands13 11 of 4 0.40Down
Virgin spermatheca101 174 of 4 2.81Up
Mated spermatheca203 504 of 4 5.62Up
Adult carcass136 74 of 4 3.80Up
Larval CNS9 14 of 4 0.27Down
Larval Salivary gland17 23 of 4 0.47Down
Larval midgut42 74 of 4 1.19None
Larval tubule13 11 of 4 0.40Down
Larval hindgut28 34 of 4 0.78None
Larval fat body13 32 of 4 0.40Down
Larval trachea186 334 of 4 5.16Up
Larval carcass657 534 of 418.20Up
S2 cells (growing)5 01 of 4 0.14Down
Whole fly36 04 of 4

Looking for CG2121-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime