FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2128-RA through 18771 annotations produced 1 hits

Hdac3 (Hdac3):

Annotation Number : CG2128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025825
Gbrowse : chr3R:1298529-1300320 (-) // 100.0 //
Probeset : 1637369_at
Accessions : protein= NP_651978;, nucleotide= NM_143721;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0004407 // histone deacetylase activity // inferred from direct assay /// 0004407 // histone deacetylase activity // inf
FlyMine data for FBgn0025825.
BDGP gene expression has embryonic in situ data for HDAC3: 4 pix of staining in 1 body parts.
BioGrid reports that CG2128 interacts with CG8291 .
TRiP has 2 RNAi stocks for FBgn0025825 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025825 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	158 ± 1	4 of 4	1.10	Up
Head	109 ± 4	4 of 4	0.70	Down
Eye	144 ± 4	4 of 4	0.97	None
Thoracicoabdominal ganglion	159 ± 5	4 of 4	1.10	None
Salivary gland	92 ± 10	4 of 4	0.62	Down
Crop	146 ± 8	4 of 4	1.00	None
Midgut	101 ± 9	4 of 4	0.70	Down
Tubule	100 ± 5	4 of 4	0.70	Down
Hindgut	106 ± 8	4 of 4	0.70	Down
Heart	60 ± 2	4 of 4	0.41	Down
Fat body	74 ± 10	4 of 4	0.50	Down
Ovary	229 ± 4	4 of 4	1.50	Up
Testis	81 ± 6	4 of 4	0.50	Down
Male accessory glands	127 ± 5	4 of 4	0.90	Down
Virgin spermatheca	64 ± 2	4 of 4	0.44	Down
Mated spermatheca	60 ± 3	4 of 4	0.41	Down
Adult carcass	90 ± 4	4 of 4	0.60	Down
Larval CNS	363 ± 18	4 of 4	2.44	Up
Larval Salivary gland	189 ± 8	4 of 4	1.27	Up
Larval midgut	133 ± 2	4 of 4	0.90	Down
Larval tubule	120 ± 3	4 of 4	0.80	Down
Larval hindgut	161 ± 1	4 of 4	1.08	Up
Larval fat body	94 ± 1	4 of 4	0.60	Down
Larval trachea	193 ± 21	4 of 4	1.30	Up
Larval carcass	140 ± 6	4 of 4	0.95	None
S2 cells (growing)	258 ± 6	4 of 4	1.74	Up
Whole fly	148 ± 2	4 of 4

Looking for CG2128-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720