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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2144-RA through 18771 annotations produced 1 hits



(CG2144):

Annotation Number : CG2144
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033187
Gbrowse : chr2R:3406784-3410051 (+) // 100.0 //
Probeset : 1636781_at
Accessions : protein= NP_610292;, nucleotide= NM_136448;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0033187.
BioGrid reports that CG2144 interacts with CG31361 .
VDRC has 2 RNAi stocks for FBgn0033187 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 ± 14 of 4 1.70Up
Head76 ± 54 of 4 0.90None
Eye114 ± 104 of 4 1.36None
Thoracicoabdominal ganglion162 ± 34 of 4 1.90Up
Salivary gland144 ± 64 of 4 1.72Up
Crop63 ± 34 of 4 0.80Down
Midgut126 ± 24 of 4 1.50Up
Tubule120 ± 64 of 4 1.40Up
Hindgut97 ± 54 of 4 1.20None
Heart62 ± 34 of 4 0.74Down
Fat body74 ± 83 of 4 0.88None
Ovary133 ± 34 of 4 1.60Up
Testis142 ± 34 of 4 1.70Up
Male accessory glands352 ± 64 of 4 4.20Up
Virgin spermatheca131 ± 54 of 4 1.57Up
Mated spermatheca141 ± 44 of 4 1.68Up
Adult carcass57 ± 34 of 4 0.70Down
Larval CNS173 ± 84 of 4 2.07Up
Larval Salivary gland461 ± 374 of 4 5.49Up
Larval midgut182 ± 134 of 4 2.17Up
Larval tubule227 ± 64 of 4 2.70Up
Larval hindgut135 ± 24 of 4 1.61Up
Larval fat body121 ± 74 of 4 1.40Up
Larval trachea159 ± 104 of 4 1.90Up
Larval carcass102 ± 24 of 4 1.22Up
S2 cells (growing)261 ± 64 of 4 3.10Up
Whole fly84 ± 34 of 4

Looking for CG2144-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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