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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2155-RA through 18771 annotations produced 1 hits



chrX:10818022-10819671 (+) // 100.0 // (vermilion):

Annotation Number : CG2155
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623355_at
Accessions : protein= , nucleotide= NP_511113;
Pathway : 0006569 // tryptophan catabolic process // traceable author statement /// 0006569 // tryptophan catabolic process // inf
FlyMine data for full length.
BioGrid reports that CG2155 interacts with CG6222 CG6222 CG6222 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 14 of 4 0.20Down
Head396 184 of 4 3.70Up
Eye176 294 of 4 1.64None
Thoracicoabdominal ganglion20 24 of 4 0.20Down
Salivary gland18 22 of 4 0.17Down
Crop14 24 of 4 0.10Down
Midgut3 00 of 4 0.00Down
Tubule11 23 of 4 0.10Down
Hindgut38 34 of 4 0.40Down
Heart445 94 of 4 4.16Up
Fat body1117 1134 of 410.44Up
Ovary3 11 of 4 0.00Down
Testis4 00 of 4 0.00Down
Male accessory glands9 10 of 4 0.10Down
Virgin spermatheca980 624 of 4 9.16Up
Mated spermatheca871 604 of 4 8.14Up
Adult carcass563 444 of 4 5.30Up
Larval CNS5 13 of 4 0.05Down
Larval Salivary gland17 14 of 4 0.16Down
Larval midgut6 00 of 4 0.06Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut14 14 of 4 0.14Down
Larval fat body554 274 of 4 5.20Up
Larval trachea14 44 of 4 0.14Down
Larval carcass11 03 of 4 0.11Down
S2 cells (growing)4 00 of 4 0.05Down
Whole fly107 64 of 4

Looking for CG2155-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime